The pyrpipe_diagnostic command allows users to easily examine pyrpipe logs. It provides several options.
- report: This command can generate a summary or detailed report of the analysis.
- shell: This command creates a bash file containing all the commands executed via pyrpipe
- benchmark: This command can generate benchmarks to compare walltimes of the different commands in the pipeline.
- multiqc: This command uses the MultiQC tool to generate a report using pyrpipe logs and other logs geenrated by the pipeline.